PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.2G190100.1.p
Common NamePRUPE_ppa002985mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 645aa    MW: 70825.8 Da    PI: 6.8431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.2G190100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-13473519455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Prupe.2G190100.1.p 473 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 519
                         799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-5282270IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-15472523No hitNo description
SuperFamilySSF474593.4E-18472533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10473519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18473532IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MVPVPKKDSS CFAALSNQFL MIPFCMPKLM KIEMGLGGGV WNDGDKAMVA AVLGTRAFDY  60
LISSSVSSNE NSCMGIGTDE NLHNKLSDLV EPPNASNFSW NYAIFWQISR SKSGDWALCW  120
GDGSCREPKE GEESEATRNL NLRLEDETQQ TMRKIVLQKL HTLFGSSDEY NGALGLDRVT  180
DTEMFLLASM YFSFPRGEGG PGKCFASGKH VWLSDLLKSG SDYCVRSFLA KSAGVQTIVL  240
VPTDVGVVEL GSVRCVGESL ELLQSIRSLF STQSSLTRSK PLTGFPVMGK RRDENAQLTN  300
LSPVERGEGV PKIFGQDLNS GNSGRPRYRE KLAVRKVEER PWDVYSNGNR IAFSSPRNGI  360
QVSSWPHIHD AKQGSPTEMY ASQSPVNNIQ ELVNGVRDDF RLNHYQPQKQ VPMQIDFSGA  420
TSRPSVVARP VGADSENSDA EAPCKEERPG TADERRPRKR GRKPANGREE PLNHVEAERQ  480
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYINELQA KLKMMEADRE NLGGTSRDAS  540
ALGANPGISM ENQSQAPDVD IQAVHDEVVV RVSCPLDSHP ASRVIQAFKE GQITVVESKL  600
AAADDTVFHT FVIKSQGSEP LTKEKLIAAF SRESNSLQSL SSVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-21792716193Transcription factor MYC3
4rs9_A2e-21792716193Transcription factor MYC3
4rqw_B2e-21792716193Transcription factor MYC3
4rqw_A2e-21792716193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454462RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2598480.0KR259848.1 Prunus avium cultivar Tieton bHLH transcription factor (bHLH13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220204.10.0hypothetical protein PRUPE_ppa002985mg
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLM5XIR60.0M5XIR6_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s09520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein